From: Unexpected link between polyketide synthase and calcium carbonate biomineralization
Type 1 PKS? | Species name | General name | Gene name | Accession number | Reference genome | Gene ID | Corresponding RNA (Unigene or RNA)? | Domians |
---|---|---|---|---|---|---|---|---|
Homo sapiens | Human | - | - | Homo sapiens GRCh37.p13 | - | - | - | |
Bos taurus | Cattle | - | - | Bos taurus UMD3. | - | - | - | |
Canis (lupus) familiaris | Dog | - | - | Canis lupus familiaris CanFam3.1 | - | - | - | |
Tursiops truncatus | Dolphin | - | - | Tursiops truncatus turTur1 | - | - | - | |
Mus musculus | Mouse | - | - | Mus musculus GRCm38.p1 | - | - | - | |
✓ | Monodelphis domestica | Opossum | PREDICTED: phthioceranic/hydroxyphthioceranic acid synthase-like | XP_001375980 | MonDom5 | LOC100024851 | no | KS-AT-DH-KR-ACP |
✓ | Sarcophilus harrisii | Tasmanian devil | mycocerosic acid synthase-like [Sarcophilus harrisii (Tasmanian devil)] | XP_003771909 | Devil_refv7.0 | LOC100922065 | N.A | KS-AT-DH-KR-ACP |
Ornithorhynchus anatinus | Platypus | LOC100091954 fatty acid synthase-like [Ornithorhynchus anatinus (platypus)] | - | Ornithorhynchus_anatinus-5.0.1 | LOC100091954 (pseudo gene) | N.A | N.A (pseudo gene) | |
✓ | Gallus gallus | Chicken | PREDICTED: phthioceranic/hydroxyphthioceranic acid synthase-like is oformX2 [Gallus gallus]. | XP_418588 | Gallus_gallus-4.0 | LOC420486 | Yes (brain; connective, blood) | KS-AT-DH-KR-ACP |
✓ | Taeniopygia guttata | Zebra finch | PREDICTED: phthioceranic/hydroxyphthioceranic acid synthase-like [Taeniopygia guttata]. | XP_002189754 | Taeniopygia_guttata-3.2.4 | LOC100231542 | No | KS-AT-DH-KR-ACP |
PREDICTED: Taeniopygia guttata phthioceranic/hydroxyphthioceranic acid synthase-like | XP_002190558 | LOC100222288 | N.A | KS-AT-DH-KR-ACP | ||||
✓ | Falco peregrinus | Peregrine falcon | PREDICTED: probable polyketide synthase 1-like [Falco peregrinus]. | XP_005234016 | F_peregrinus_v1.0 | LOC101916009 | N.A | KS-AT-DH-KR-ACP |
✓ | Anolis carolinensis | Green anole | PREDICTED: phthioceranic/hydroxyphthioceranic acid synthase-like [Anolis carolinensis]. | XP_003222100 | AnoCar2.0 | LOC100564455 | No | KS*-AT-DH-KR-ACP |
PREDICTED: phthioceranic/hydroxyphthioceranic acid synthase-like [Anolis carolinensis]. | XP_0032222101 | LOC100564655 | No | KS-AT-DH-KR-ACP | ||||
PREDICTED: phthioceranic/hydroxyphthioceranic acid synthase-like [Anolis carolinensis]. | XP_0032222102 | LOC100564856 | No | KS-AT-DH-KR-ACP | ||||
✓ | Chelonia mydas | Green sea turtle | Phthioceranic/hydroxyphthioceranic acid synthase [Chelonia mydas]. | EMP37033 | CheMyd_v1.0 | locus_tag: UY3_05838 | N.A | KS-AT-DH-KR-ACP |
Polyketide synthase Pks N [Chelonia mydas] | EMP24664 | locus_tag: UY3_18267 | N.A | KS*-AT-DH-KR-ACP | ||||
✓ | Chrysemys picta | Painted turtle | PREDICTED: uncharecterized protien LOC101936604 [Chrysemys picta bellii] | XP_005291085 | Chrysemys_picta_bellii-3.0.1 | LOC101936604 | N.A | KS-AT*-DH*-KR-ACP |
PREDICTED: uncharecterized protien LOC101937174 [Chrysemys picta bellii] | XP_005291087 | LOC1019371714 | N.A | other-KS-AT*-DH*-KR-ACP | ||||
✓ | Pelodiscus sinensis | Chinese soft shell turtle | pep: KNOWN_BY_PROJECTION_protein_coding | Scaffold no. JH209275.1 | PelSin_1.0 | ENSPSIG00000004874 | No | KS*-AT-DH-KR-ACP |
Xenopus (Silurana) tropicalis | Tropical clawed toad | - | - | Xenopus (Silurana) tropicalis build 1 genome database (v4.2 assembly) | - | - | - | |
✓ | Oryzias latipes | Medaka | OIPKS (PREDICTED: phthioceranic/hydroxyphthioceranic acid synthase-like [Oryzias latipes]) | XP_004081385 | Oryzias latipes ASM31367v1 | LOC101169887 | No | KS-AT-DH-KR-ACP |
OIPKS-2 (PREDICTED: phthioceranic/hydroxyphthioceranic acid synthase type I P ps D-like [Oryzias latipes]) | XP_004081384 | LOC101169644 | No | KS-AT-DH*-KR-ACP | ||||
OIPKS-3 (PREDICTED: probable polketide synthase 1-like [Oryzias latipes]) | XP_004080917 | LOC101170716 | No | KS-AT-DH*-KR-ACP | ||||
✓ | Danio rerio | Zebrafish | Danio rerio wu:fc01d11 (wu: fc01d11),mRNA | XP_682975 | Danio rerio Zv9 | wu:fc01d11 | Yes (muscle) | KS-AT-DH-KR-ACP |
si: dkey-61p9.11 | NP_001041530 | LOC100000781 | Yes (kidney) | KS-AT-DH-KR-ACP | ||||
✓ | Takifugu rubripes | Fugu | phthioceranic/hydroxyphthioceranic acid synthase-like | XP_003968201 | FUGU5 | LOC101079294 | No | KS-AT-DH-KR-ACP |
PREDICTED: Takifugu rubripes lovastatin nonaketide synthase-like (LOC101079519), mRNA | XP_003968202 | LOC101079519 | No | KS-AT-DH-KR-ACP | ||||
Petromyzon marinus | Lamprey | - | - | Pmarinus_7.0 | - | - | - | |
✓ | Branchiostoma Floridae | Lancelet | hypothetical protien BRAFLDRAFT_205831, partial [Branchiostoma floridae]. | XP002599684 (=EEN55696) | Branchiostoma floridae v1.0 | Gene ID:7231796 | N.A. | KS-AT-DH-KR |
hypothetical protien BRAFLDRAFT_247081 [Branchiostoma floridae] | XP_002591573 | Gene ID:7219804 | N.A. | KS-AT-DH*-KR | ||||
hypothetical protien BRAFLDRAFT_90481 [Branchiostoma floridae] | XP_002589799 | Gene ID:7210376 | N.A. | KS-AT-DH*-KR-AMP | ||||
hypothetical protien BRAFLDRAFT_96868 [Branchiostoma floridae] | XP_002598386 | Gene ID:7254845 | N.A. | KS-AT-DH-KR*-TE-C-AMP | ||||
hypothetical protien BRAFLDRAFT_96863 [Branchiostoma floridae] | XP_002598380 | Gene ID:7248951 | N.A. | KS-AT-DH-KR*-ACP-TE-C-AMP | ||||
hypothetical protien BRAFLDRAFT_87472 [Branchiostoma floridae] | XP_002589000 | Gene ID:7246004 | N.A. | KS-AT-DH-KR*-ACP-C-AMP | ||||
hypothetical protien BRAFLDRAFT_125690 [Branchiostoma floridae] | XP_002610053 | Gene ID:7207083 | N.A. | KS*-AT-DH-KR*-ACP*-TE-C | ||||
hypothetical protien BRAFLDRAFT_91451 [Branchiostoma floridae] | XP_002608071 | Gene ID:7214024 | N.A. | KS-AT-DH-MT-ADH-KR-ACP-α | ||||
hypothetical protien BRAFLDRAFT_87410 [Branchiostoma floridae] | XP_002605916 | Gene ID:7243248 | N.A. | KS-AT-DH-MT-ADH-KR-ACP | ||||
hypothetical protien BRAFLDRAFT_89867 [Branchiostoma floridae] | XP_002610100 | Gene ID:7206066 | N.A. | KS-AT-DH-MT-ADH-KR-ACP | ||||
hypothetical protien BRAFLDRAFT_87413 [Branchiostoma floridae] | XP_002605913 | Gene ID:7246000 | N.A. | KS-AT-DH-MT-ADH-KR-ACP | ||||
hypothetical protien BRAFLDRAFT_125650 [Branchiostoma floridae] | XP_002610103 | Gene ID: 7207596 | N.A. | AMP-KS-AT-DH-MT-ADH-KR-ACP | ||||
hypothetical protien BRAFLDRAFT_71890 [Branchiostoma floridae] | XP_002613500 | Gene ID: 7224978 | N.A. | KS*-AT-DH | ||||
✓ | Saccoglossus kowalevskii | Acorn worm | PREDICTED: fatty acids synthase-like | XP_002734101 | Skow_1.1 | LOC100373061 | N.A | KS*-AT-DH-KR-ACP-C-AMP |
Ciona intestinalis | Ascidian | - | - | Ciona intestinalis KH | - | - | - | |
✓ | Strongy locentrotus purpuratus | Purple sea urchin | LOC588806 probable polyketide synthase 1-like [Strongylocentrotus purpuratus (purple sea urchin)] | XP_793564.2 | Spur_3.1 | LOC58806 | Yes | KS-AT*-DH*-MT-ADH-KR*-ACP |
LOC592147 polyketide synthase 2 | NP_001239013.1 | LOC592147 | Yes | KS-AT-DH*-KR-ACP-TE | ||||
✓ | Acropora digitifera | Coral | aug_v2a.12941.t1 aug_v2a.12941scaf5202:2805-26950(−) | aug_v2a.12941 | Adig_1.0 | aug_v2a.12941 | N.A. | other-KS-AT-DH-KR-ACP*-TE |
aug_v2a.16843.t1 aug_v2a.16843scaf8086:11276-29700(−) | aug_v2a.16843 | aug_v2a.16843 | N.A. | other-KS-AT-DH-KR-TE | ||||
aug_v2a.16847.t1 aug_v2a.16847scaf8086:95926-115499(−) | aug_v2a.16847 | aug_v2a.16847 | N.A. | other-KS-AT-DH-KR-TE | ||||
Nematostella vectensis | Sea anemone | - | - | Nematostella vectensis v1.0 | - | - | - | |
Hydra magnipapillata | Hydra | - | - | Hydra magnipapillataHydra_RP_1.0 | - | - | - | |
Amphimedon queenslandica | Sponges | - | - | Amphimedon queenslandicav1.0 | - | - | - | |
✓ | Caenorhabditis elegans | Nematode | Protein C41A3.1 [Caenorhabditiselegans] | NP_508923 | Caenorhabditis elegansWBcel235 | C41A3.1 | Yes | KS-KS-DH-ACP-KS-ACP-ACP-KR-ACP-AT-DH-KS-KR-KS-AT-ADH-ACP-C-AMP-ACP-TE |
Drosophila melanogaster | Fruit fly | - | - | Drosophila melanogasterRelease 5 | - | - | - |