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Table 2 Type I PKSs found in animal lineage

From: Unexpected link between polyketide synthase and calcium carbonate biomineralization

Type 1 PKS?

Species name

General name

Gene name

Accession number

Reference genome

Gene ID

Corresponding RNA (Unigene or RNA)?

Domians

 

Homo sapiens

Human

-

-

Homo sapiens GRCh37.p13

-

-

-

 

Bos taurus

Cattle

-

-

Bos taurus UMD3.

-

-

-

 

Canis (lupus) familiaris

Dog

-

-

Canis lupus familiaris CanFam3.1

-

-

-

 

Tursiops truncatus

Dolphin

-

-

Tursiops truncatus turTur1

-

-

-

 

Mus musculus

Mouse

-

-

Mus musculus GRCm38.p1

-

-

-

✓

Monodelphis domestica

Opossum

PREDICTED: phthioceranic/hydroxyphthioceranic acid synthase-like

XP_001375980

MonDom5

LOC100024851

no

KS-AT-DH-KR-ACP

✓

Sarcophilus harrisii

Tasmanian devil

mycocerosic acid synthase-like [Sarcophilus harrisii (Tasmanian devil)]

XP_003771909

Devil_refv7.0

LOC100922065

N.A

KS-AT-DH-KR-ACP

 

Ornithorhynchus anatinus

Platypus

LOC100091954 fatty acid synthase-like [Ornithorhynchus anatinus (platypus)]

-

Ornithorhynchus_anatinus-5.0.1

LOC100091954 (pseudo gene)

N.A

N.A (pseudo gene)

✓

Gallus gallus

Chicken

PREDICTED: phthioceranic/hydroxyphthioceranic acid synthase-like is oformX2 [Gallus gallus].

XP_418588

Gallus_gallus-4.0

LOC420486

Yes (brain; connective, blood)

KS-AT-DH-KR-ACP

✓

Taeniopygia guttata

Zebra finch

PREDICTED: phthioceranic/hydroxyphthioceranic acid synthase-like [Taeniopygia guttata].

XP_002189754

Taeniopygia_guttata-3.2.4

LOC100231542

No

KS-AT-DH-KR-ACP

PREDICTED: Taeniopygia guttata phthioceranic/hydroxyphthioceranic acid synthase-like

XP_002190558

LOC100222288

N.A

KS-AT-DH-KR-ACP

✓

Falco peregrinus

Peregrine falcon

PREDICTED: probable polyketide synthase 1-like [Falco peregrinus].

XP_005234016

F_peregrinus_v1.0

LOC101916009

N.A

KS-AT-DH-KR-ACP

✓

Anolis carolinensis

Green anole

PREDICTED: phthioceranic/hydroxyphthioceranic acid synthase-like [Anolis carolinensis].

XP_003222100

AnoCar2.0

LOC100564455

No

KS*-AT-DH-KR-ACP

PREDICTED: phthioceranic/hydroxyphthioceranic acid synthase-like [Anolis carolinensis].

XP_0032222101

LOC100564655

No

KS-AT-DH-KR-ACP

PREDICTED: phthioceranic/hydroxyphthioceranic acid synthase-like [Anolis carolinensis].

XP_0032222102

LOC100564856

No

KS-AT-DH-KR-ACP

✓

Chelonia mydas

Green sea turtle

Phthioceranic/hydroxyphthioceranic acid synthase [Chelonia mydas].

EMP37033

CheMyd_v1.0

locus_tag: UY3_05838

N.A

KS-AT-DH-KR-ACP

Polyketide synthase Pks N [Chelonia mydas]

EMP24664

locus_tag: UY3_18267

N.A

KS*-AT-DH-KR-ACP

✓

Chrysemys picta

Painted turtle

PREDICTED: uncharecterized protien LOC101936604 [Chrysemys picta bellii]

XP_005291085

Chrysemys_picta_bellii-3.0.1

LOC101936604

N.A

KS-AT*-DH*-KR-ACP

PREDICTED: uncharecterized protien LOC101937174 [Chrysemys picta bellii]

XP_005291087

LOC1019371714

N.A

other-KS-AT*-DH*-KR-ACP

✓

Pelodiscus sinensis

Chinese soft shell turtle

pep: KNOWN_BY_PROJECTION_protein_coding

Scaffold no. JH209275.1

PelSin_1.0

ENSPSIG00000004874

No

KS*-AT-DH-KR-ACP

 

Xenopus (Silurana) tropicalis

Tropical clawed toad

-

-

Xenopus (Silurana) tropicalis build 1 genome database (v4.2 assembly)

-

-

-

✓

Oryzias latipes

Medaka

OIPKS (PREDICTED: phthioceranic/hydroxyphthioceranic acid synthase-like [Oryzias latipes])

XP_004081385

Oryzias latipes ASM31367v1

LOC101169887

No

KS-AT-DH-KR-ACP

OIPKS-2 (PREDICTED: phthioceranic/hydroxyphthioceranic acid synthase type I P ps D-like [Oryzias latipes])

XP_004081384

LOC101169644

No

KS-AT-DH*-KR-ACP

OIPKS-3 (PREDICTED: probable polketide synthase 1-like [Oryzias latipes])

XP_004080917

LOC101170716

No

KS-AT-DH*-KR-ACP

✓

Danio rerio

Zebrafish

Danio rerio wu:fc01d11 (wu: fc01d11),mRNA

XP_682975

Danio rerio Zv9

wu:fc01d11

Yes (muscle)

KS-AT-DH-KR-ACP

si: dkey-61p9.11

NP_001041530

LOC100000781

Yes (kidney)

KS-AT-DH-KR-ACP

✓

Takifugu rubripes

Fugu

phthioceranic/hydroxyphthioceranic acid synthase-like

XP_003968201

FUGU5

LOC101079294

No

KS-AT-DH-KR-ACP

PREDICTED: Takifugu rubripes lovastatin nonaketide synthase-like (LOC101079519), mRNA

XP_003968202

LOC101079519

No

KS-AT-DH-KR-ACP

 

Petromyzon marinus

Lamprey

-

-

Pmarinus_7.0

-

-

-

✓

Branchiostoma Floridae

Lancelet

hypothetical protien BRAFLDRAFT_205831, partial [Branchiostoma floridae].

XP002599684 (=EEN55696)

Branchiostoma floridae v1.0

Gene ID:7231796

N.A.

KS-AT-DH-KR

   

hypothetical protien BRAFLDRAFT_247081 [Branchiostoma floridae]

XP_002591573

 

Gene ID:7219804

N.A.

KS-AT-DH*-KR

   

hypothetical protien BRAFLDRAFT_90481 [Branchiostoma floridae]

XP_002589799

 

Gene ID:7210376

N.A.

KS-AT-DH*-KR-AMP

   

hypothetical protien BRAFLDRAFT_96868 [Branchiostoma floridae]

XP_002598386

 

Gene ID:7254845

N.A.

KS-AT-DH-KR*-TE-C-AMP

   

hypothetical protien BRAFLDRAFT_96863 [Branchiostoma floridae]

XP_002598380

 

Gene ID:7248951

N.A.

KS-AT-DH-KR*-ACP-TE-C-AMP

   

hypothetical protien BRAFLDRAFT_87472 [Branchiostoma floridae]

XP_002589000

 

Gene ID:7246004

N.A.

KS-AT-DH-KR*-ACP-C-AMP

   

hypothetical protien BRAFLDRAFT_125690 [Branchiostoma floridae]

XP_002610053

 

Gene ID:7207083

N.A.

KS*-AT-DH-KR*-ACP*-TE-C

   

hypothetical protien BRAFLDRAFT_91451 [Branchiostoma floridae]

XP_002608071

 

Gene ID:7214024

N.A.

KS-AT-DH-MT-ADH-KR-ACP-α

   

hypothetical protien BRAFLDRAFT_87410 [Branchiostoma floridae]

XP_002605916

 

Gene ID:7243248

N.A.

KS-AT-DH-MT-ADH-KR-ACP

   

hypothetical protien BRAFLDRAFT_89867 [Branchiostoma floridae]

XP_002610100

 

Gene ID:7206066

N.A.

KS-AT-DH-MT-ADH-KR-ACP

hypothetical protien BRAFLDRAFT_87413 [Branchiostoma floridae]

XP_002605913

Gene ID:7246000

N.A.

KS-AT-DH-MT-ADH-KR-ACP

   

hypothetical protien BRAFLDRAFT_125650 [Branchiostoma floridae]

XP_002610103

 

Gene ID: 7207596

N.A.

AMP-KS-AT-DH-MT-ADH-KR-ACP

   

hypothetical protien BRAFLDRAFT_71890 [Branchiostoma floridae]

XP_002613500

 

Gene ID: 7224978

N.A.

KS*-AT-DH

✓

Saccoglossus kowalevskii

Acorn worm

PREDICTED: fatty acids synthase-like

XP_002734101

Skow_1.1

LOC100373061

N.A

KS*-AT-DH-KR-ACP-C-AMP

 

Ciona intestinalis

Ascidian

-

-

Ciona intestinalis KH

-

-

-

✓

Strongy locentrotus purpuratus

Purple sea urchin

LOC588806 probable polyketide synthase 1-like [Strongylocentrotus purpuratus (purple sea urchin)]

XP_793564.2

Spur_3.1

LOC58806

Yes

KS-AT*-DH*-MT-ADH-KR*-ACP

LOC592147 polyketide synthase 2

NP_001239013.1

LOC592147

Yes

KS-AT-DH*-KR-ACP-TE

✓

Acropora digitifera

Coral

aug_v2a.12941.t1 aug_v2a.12941scaf5202:2805-26950(−)

aug_v2a.12941

Adig_1.0

aug_v2a.12941

N.A.

other-KS-AT-DH-KR-ACP*-TE

aug_v2a.16843.t1 aug_v2a.16843scaf8086:11276-29700(−)

aug_v2a.16843

aug_v2a.16843

N.A.

other-KS-AT-DH-KR-TE

aug_v2a.16847.t1 aug_v2a.16847scaf8086:95926-115499(−)

aug_v2a.16847

aug_v2a.16847

N.A.

other-KS-AT-DH-KR-TE

 

Nematostella vectensis

Sea anemone

-

-

Nematostella vectensis v1.0

-

-

-

 

Hydra magnipapillata

Hydra

-

-

Hydra magnipapillataHydra_RP_1.0

-

-

-

 

Amphimedon queenslandica

Sponges

-

-

Amphimedon queenslandicav1.0

-

-

-

✓

Caenorhabditis elegans

Nematode

Protein C41A3.1 [Caenorhabditiselegans]

NP_508923

Caenorhabditis elegansWBcel235

C41A3.1

Yes

KS-KS-DH-ACP-KS-ACP-ACP-KR-ACP-AT-DH-KS-KR-KS-AT-ADH-ACP-C-AMP-ACP-TE

 

Drosophila melanogaster

Fruit fly

-

-

Drosophila melanogasterRelease 5

-

-

-

  1. Asterisks show domains lacking a residue of the active site that is contained in OlPKS.
  2. Sequence sources are mainly NCBI protein database, except dolphin, Chinese soft shell turtle, lamprey, coral, and sea anemone.
  3. KS: ketoacyl synthase, AT: acyl transferase, DH: dehydratase, KR: ketoreductase, ACP: acyl carrier protein domain, TE: thioesterase, AMP: AMP-binding site, MT: methyltransferase, ADH: alcohol dehydrogenase, C: condensation domain.