Spatial and temporal variation at major histocompatibility complex class IIB genes in the endangered Blakiston’s fish owl

Zoological Letters

Table 3 Results of analysis of molecular variance (AMOVA)

		Jaccard distance			Kimura 2-parameter distance
Source of variation	Df	Variance (%)	Φ statistics	P	Variance (%)	Φ statistics	P
Between populations	4	0.024 (20.70)	0.207	<0.001	0.014 (17.57)	0.176	<0.001
Between periods within populations	8	0.002 (1.32)	0.017	0.050	0.001 (1.18)	0.014	0.093
Within periods	161	0.091 (77.98)	0.220	<0.001	0.067 (81.25)	0.188	<0.001

AMOVA was performed with two different genetic distance matrixes calculated in pairwise comparison of individuals: 1) Jaccard distance, and 2) average number of nucleotide substitutaions per site between individuals, calculated with the Kimura 2-parameter model.