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Table 1 List of taxa included in each dataset

From: Phylogenetic position of Loricifera inferred from nearly complete 18S and 28S rRNA gene sequences

Taxa Data set Accession number
   Species 18S + 28S (50OTU) 18S (50OTU) 28S (50OTU) 18S (65OTU) 18S (63OTU) 18S 28S
Loricifera   Rugiloricus sp. LC032019 LC032020
   Nanaloricus sp.       EU669461  
   Pliciloricus sp.      AY746986 -
Arthropoda Euchelicerata Limulus polyphemus U91490 AF212167
   Calocheiridius cf. termitophilus AY859559 AY859558
   Siro rubens U36998 AY859602
   Eremobates sp. AY859573 AY859572
   Pandinus imperator AY210831 AY210830
   Mastigoproctus giganteus AF005446 AY859587
   Misumenops asperatus AY210445 AY210461
  Pycnogonida Anoplodactylus portus AY859551 AY859550
   Callipallene sp. AY210808 AY210807
  Myriapoda Polyxenidae sp. AY859596 AY859595
   Orthoporus sp. AY210829 AY210828
   Cherokia georgiana AY859563 AY859562
   Scutigera coleoptrata AF173238 AY859601
   Craterostigmus tasmanianus AF000774 AY859569
  Crustacea Cyprididae sp. AY210816 AY210815
   Anaspides tasmaniae L81948 AY859549
   Squilla empusa L81946 AY210842
   Heteromysis sp. AY859580 AY859578–79
   Gaetice depressus AY859577 AY859575–76
   Panulirus argus U19182 AY210833–35
   Homarus americanus AF235971 AY859581
   Eulimnadia texana AF144211 AY859574
   Triops longicaudatus AF144219 AY157606
  Hexapoda Podura aquatica AF005452 AY210838
   Sminthurus viridus AY859604 AY859603
   Dilta littoralis AF005457 AY859570–71
   Callibaetis ferrugineus AF370791 AY859557
   Mantis religiosa AY859586 AY859585
   Zootermopsis angusticollis AY859615 AY859614
   Gromphadorhina laevigata AY210820 AY210819
   Gomphocerinae sp. AY859547 AY859546
   Vespula pensylvanica AY859613 AY859612
   Merope tuber AF286287 DQ202351
Onychophora   Peripatoides novaezealandiae AF342794 AF342791–93
Tardigrada   Milnesium tardigradum   U49909 -
   Milnesium sp.      - AY210826
   Echiniscus blumi     HM193375  
   Testechiniscus spitzbergensis     EU266967  
   Richtersius coronifer     AY582123  
Nematoda Spiurina Ascaris lumbricoides U94366 AY210806
  Dorylaimia Trichinella spiralis U60231 AF342803
   Xiphinema rivesi AF036610 AY210845
  Enoplia Pontonema vulgare     AF047890  
  Desmodorida Spirinia elongata     EF527426  
  Monhysterida Theristus agilis     AY284695
Nematomorpha   Chordodes morgani AF036639 AF342787
   Gordius aquaticus X80233 AY210817
   Nectonema agile     AF421767
Priapulida   Priapulus caudatus Z38009 AY210840
   Halicryptus spinulosus AF342790 AF342789
   Tubiluchus corallicola     AF119086  
   Meiopriapulus fijiensis       JN211192  
Kinorhyncha   Pycnophyes sp. AY859598 AY859597
   Dracoderes abei     AB738350 AB738351
   Echinoderes dujardinii     LC007044 LC007065
   Centroderes spinosus     KF372858
   Campyloderes cf. vanhoeffeni     LC007037  
Lophotrochozoa (Outgroup) Nemertea Amphiporus sp. AF119077 AF342786
  Mollusca Placopecten magellanicus X53899 AF342798
  Platyhelminthes Stylochus zebra AF342801 AF342800
  Echiura Urechis caupo AF342805 AF342804
Deuterostomes (Outgroup) Hemichordata Ptychodera fava AF278681 AF212176
  Chordata Ciona intestinalis AB013017 AF212177
  1. Taxa included in each data set, with GenBank accession numbers for sequences