Table 2 List of accession numbers of NKA α-subunits used in phylogenetic analysis. Known isoforms are matched with accession numbers and annotation. Types of isoform duplication are summarized
From: Flexible selection of diversified Na+/K+-ATPase α-subunit isoforms for osmoregulation in teleosts
Species | Annotation | Accession Number | Isoform description | Duplication types |
|---|---|---|---|---|
Human | ATP1A1 | NM_000701 | ||
ATP1A2 | NM_000702 | |||
ATP1A3 | NM_152296 | |||
Chicken | ATP1A1 | NM_205521 | ||
ATP1A2 | NM_205476 | |||
ATP1A3 | NM_205475 | |||
American alligator | ATP1A1 | XM_006261470 | ||
ATP1A2 | AKHW02002543 | |||
Green anole | ATP1A1 | XM_008119744 | ||
ATP1A2 | XM_008124767 | |||
ATP1A3 | ENSACAG00000015035 | |||
Python | ATP1A1 | XM_007435293 | ||
ATP1A2 | XM_007429082 | |||
ATP1A3 | XM_007437572 | |||
Chinese soft-shelled turtle | ATP1A1 | XM_006132885 | ||
ATP1A2 | XP_014425124 | |||
Western painted turtle | ATP1A1 | XM_005292679 | ||
ATP1A2 | XM_005293763 | |||
ATP1A3 | XM_005312502 | |||
African clawed frog | ATP1A1-a | NM_001090595 | ||
ATP1A1-b | NM_001089111 | |||
ATP1A2 | NM_001089643 | |||
ATP1A3 | NM_001086971 | |||
Elephantfish | ATP1A1 | XM_007891602 | ||
White-rimmed stingray | ATP1A1 | KF724944 | ||
Spiny dogfish | atn1 | AJ781093 | ||
Zebrafish | atp1a1a.1 | ENSDARG00000002791 | Merged α1 gene | |
atp1a1a.1-001 (transcript) | ENSDART00000081047 | α1a/b-1 | Tandem duplication from ancestral α1a/b | |
atp1a1a.1-201 (transcript) | ENSDART00000161781 | α1c-1 + α1a/b-1 + α1a/b-4 (chimera) | Chimeric transcript among atp1a1a.4-001, atp1a1a.1-001, & atp1a1a.5-001 | |
atp1a1a.2 | ENSDARG00000007739 | Merged α1 gene | ||
atp1a1a.2-001 (transcript) | ENSDART00000006449 | α1a/b-2 | Tandem duplication from ancestral α1a/b | |
atp1a1a.2-201 (transcript) | ENSDART00000166968 | α1a/b-1 + α1a/b-2 + α1a/b-3 (chimera) | Chimeric transcript among atp1a1a.1-001, atp1a1a.2-001, & atp1a1a.3-001 | |
atp1a1a.3 | ENSDARG00000039131 | |||
atp1a1a.3-001 (transcript) | ENSDART00000103850 | α1a/b-3 | Tandem duplication from ancestral α1a/b | |
atp1a1a.4 | ENSDARG00000001870 | |||
atp1a1a.4-001 (transcript) | ENSDART00000048828 | α1c-1 | Independent duplication | |
atp1a1a.5 | ENSDARG00000040252 | |||
atp1a1a.5-001 (transcript) | ENSDART00000006013 | α1a/b-4 | Tandem duplication from ancestral α1a/b | |
atp1a1b | ENSDARG00000019856 | α1c-2 | Independent duplication | |
atp1a2a | ENSDARG00000010472 | α2 | ||
atp1a3a | ENSDARG00000018259 | α3a | 3RWGD | |
atp1a3b | ENSDARG00000104139 | α3b | 3RWGD | |
Tilapia | atp1a1 (1 of 5) | ENSONIG00000012358 | α1a-1 | Tandem duplication from ancestral α1a |
atp1a1 (2 of 5) | ENSONIG00000012375 | α1a-2 | Tandem duplication from ancestral α1a | |
atp1a1a.4 (1 of 2) | ENSONIG00000012396 | α1b-2 | Tandem duplication from ancestral α1b | |
atp1a1a.4 (2 of 2) | ENSONIG00000012431 | α1b-1 | Tandem duplication from ancestral α1b | |
atp1a1b | ENSONIG00000012456 | α1c | ||
atp1a2a | ENSONIG00000015107 | α2 | ||
atp1a3a | ENSONIG00000004959 | α3a | 3RWGD | |
atp1a3b | ENSONIG00000013081 | α3b | 3RWGD | |
Stickleback | atp1a1a.4 | ENSGACG00000014324 | Merged α1 gene | |
atp1a1a.4-201 (transcript) | ENSGACT00000018945 | α1a/b | Ancestral α1a/b | |
atp1a1a.4-202 (transcript) | ENSGACT00000018949 | α1a/b + α1c (chimera) | Chimeric transcript between ancestral α1a/b and α1c | |
atp1a1a.4-203 (transcript) | ENSGACT00000018954 | α1a/b | Alternative transcript of ancestral α1a/b | |
atp1a1a.4-204 (transcript) | ENSGACT00000018961 | α1c | Ancestral α1c | |
atp1a2a | ENSGACG00000017683 | α2 | ||
atp1a3a | ENSGACG00000001959 | α3a | 3RWGD | |
atp1a3b | ENSGACG00000009524 | α3b | 3RWGD | |
Medaka | atp1a1a.4 (2 of 2) | ENSORLG00000018557 | α1a | Independent duplication from atp1a1a.4 (1 of 2) |
atp1a1a.4 (1 of 2) | ENSORLG00000002122 | α1b | ||
atp1a1b | ENSORLG00000002047 | α1c | ||
atp1a2a | ENSORLG00000002639 | α2 | ||
atp1a3a | ENSORLG00000007036 | α3a | 3RWGD | |
atp1a3b | ENSORLG00000013191 | α3b | 3RWGD | |
Killifish | atp1a1a | AY057072 | α1a | |
atp1a1b | AY430089 | α1b | ||
atp1a2 | AY057073 | α2 | ||
atp1a3 | XM_012855590 | α3 | ||
Fugu | atp1a1a.4 | ENSTRUG00000013282 | α1a/b | |
atp1a1b | ENSTRUG00000012850 | α1c | ||
atp1a3b | ENSTRUG00000008243 | α3a | ||
atp1a3a | ENSTRUG00000002904 | α3b | ||
Tetraodon | atp1a1a.4 | ENSTNIG00000006257 | α1a/b | |
atp1a1b | ENSTNIG00000006396 | α1c | ||
atp1a2a (2 of 2) | ENSTNIG00000004890 | α2 | ||
atp1a3b | ENSTNIG00000008007 | α3 | ||
Rainbow trout | atp1a1a | AY319391 | α1a | |
atp1a1b | AY319390 | α1b | ||
atp1a1c | AY319389 | α1c | ||
atp1a2 | AY319387 | α2 | ||
atp1a3 | AY319388 | α3 | ||
Atlantic salmon | atp1a1a | AIB08901 | α1a | |
atp1a1b-1 | AIG14471 | α1b | Salmon specific tetraploidy | |
atp1a1b-2 | AIG14472 | α1b | Salmon specific tetraploidy | |
atp1a1c | AIB08902 | α1c | ||
atp1a2 | AY692147 | α2 | ||
Japanese eel | atp1a1c-1 | KU976438 | α1c-1 | Independent duplication from ancestral α1c |
atp1a1c-2 | KU976439 | α1c-2 | Independent duplication from ancestral α1c | |
atp1a1c-3 | KU976440 | α1c-3 | Independent duplication from ancestral α1c | |
atp1a2 | KU976441 | α2 | ||
atp1a3 | KU976442 | α3 |