Table 4 Differences in transposase CDSs and amino acids, and presumptive status
Name | Nucleotide substitution | Nucleotide gap | Amino acid substitution | dN/dS | Presumptive status |
|---|---|---|---|---|---|
A. Differences between Nigerian and Asashima lines, and presumptive status | |||||
Tr1 | 20 | 6 | 10 | 0.396 | active? |
Tr2 | 11 | 24 | frame-shift | – | active? |
Tr3 | 5 | 0 | 3 | 1.006 | domestication? |
Tr4 | 11 | 12 | 7 | 0.501 | ancient domestication |
Tr5 | currently active | ||||
Tr6 | 1 | 0 | 1 | dS = 0 | currently active |
Tr7 | 9 | 0 | 7 | 0.696 | currently active |
Tr8 | 26 | 0 | 21 | 1.057 | currently active |
Tr9 | currently active | ||||
Tr10 | 5 | 0 | 1 | 0.084 | ancient domestication |
Tr11 | currently active | ||||
Tr12 | 205 | 991 | frame-shift | – | active? |
Tr13 | 26 | 0 | 8 | 0.173 | ancient domestication |
Tr14 | currently active | ||||
Tr15 | 0 | 3 | 0 | dS = 0 | currently active |
Tr16 | 3 | 0 | 2 | 0.527 | ancient domestication |
Tr17 | 24 | 0 | 13 | 0.434 | domestication? |
Tr18 | 15 | 0 | 9 | 0.504 | domestication? |
Tr19 | 4 | 30 | 4 | dS = 0 | ancient domestication |
Tr20 | 53 | 0 | 29 | 0.403 | currently active |
Tr21 | currently active | ||||
Tr22 | 0 | 0 | 0 | dS = 0 | currently active |
Tr23 | currently active | ||||
Tr24 | 57 | 6 | 23 | 0.28 | domestication? |
Tr25 | active? | ||||
Tr26 | 15 | 0 | 3 | 0.058 | domestication? |
Tr27 | 55 | 0 | 19 | 0.118 | active? |
Tr28 | 9 | 0 | 6 | 0.629 | ancient domestication |
Tr29 | 27 | 0 | 12 | 0.312 | ancient domestication |
Tr30 | 5 | 0 | 2 | 0.328 | ancient domestication |
Tr31 | 21 | 3 | 11 | 0.359 | ancient domestication |
Tr32 | 7 | 0 | 6 | 1.444 | domestication? |
Tr33 | 30 | 0 | 8 | 0.14 | ancient domestication |
Tr34 | 23 | 0 | 9 | 0.192 | domestication? |
Tr35 | active? | ||||
Tr36 | active? | ||||
Tr37 | domestication? | ||||
Tr38 | 12 | 0 | 5 | 0.196 | domestication? |
B. Differences between X. laevis and X. tropicalis, and presumptive status | |||||
Lv1 | currently active | ||||
Lv2 | 466 | 237 | 202 | 0.285 | domestication? |
Lv3 | 472 | 63 | 210 | 0.194 | currently active |
Lv4 | 263 | 6 | 110 | 0.257 | ancient domestication |
Lv5 | domestication? | ||||
Lv6 | currently active | ||||
Lv7 | 289 | 51 | 140 | 0.391 | ancient domestication |
Lv8 | 293 | 57 | 141 | 0.301 | ancient domestication |
Lv9 | 303 | 42 | 154 | 0.341 | ancient domestication |
Lv10 | 302 | 36 | 161 | 0.463 | ancient domestication |
Lv11 | 335 | 42 | 172 | 0.358 | ancient domestication |
Lv12 | 546 | 252 | 213 | 0.100 | domestication? |
Lv13 | 359 | 198 | 164 | 0.365 | ancient domestication |
Lv14 | 305 | 36 | 155 | 0.413 | ancient domestication |
Lv15 | 411 | 393 | 157 | 0.195 | domestication? |
Lv16 | 305 | 36 | 162 | 0.349 | ancient domestication |
Lv17 | 331 | 54 | 162 | 0.336 | ancient domestication |
Lv18 | domestication? | ||||
Lv19 | 335 | 69 | 156 | 0.328 | ancient domestication |
Lv20 | 323 | 66 | 165 | 0.497 | ancient domestication |
Lv21 | 312 | 33 | 166 | 0.472 | ancient domestication |
Lv22 | 356 | 72 | 193 | 0.521 | ancient domestication |
Lv23 | 591 | 294 | 240 | 0.153 | active? |
Lv24 | domestication? | ||||