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Table 1 Samples and sequence reads examined in this study

From: Ancient rivers shaped the current genetic diversity of the wood mouse (Apodemus speciosus) on the islands of the Seto Inland Sea, Japan

Specimen code Sampling locality Collection data Locality codea Readsb Filtered readsc Sequencee
FACT11 Fukuyama University, East 2009.05.14 Fuk 610,605 464,378 3,192,959
FACT65 Fukuyama University, South 2011.05.18 Fuk 546,955 411,144 2,850,601
FACT68 Fukuyama University, West 2011.05.20 Fuk 523,769 394,501 2,610,847
FACT88 Fukuyama University, South 2011.07.27 Fuk 323,440 242,039 1,639,713
FACT89 Fukuyama University, South 2011.07.27 Fuk 403,307 302,261 2,204,778
FACT95 Fukuyama University, South 2011.10.04 Fuk 342,990 257,740 1,695,525
FACT96 Fukuyama University, South 2011.10.07 Fuk 173,663 131,241 950,228
FACT100 Fukuyama University, South 2011.11.01 Fuk 526,191 394,848 2,802,797
FACT120 Fukuyama University, South 2012.05.29 Fuk 460,987 349,220 2,208,359
FACT121 Fukuyama University, South 2012.05.29 Fuk 277,445 207,640 1,342,532
FACT134 Fukuyama University, South 2012.07.06 Fuk 582,717 437,018 3,029,354
FACT155 Fukuyama University, Central 2012.11.16 Fuk 408,609 304,913 2,031,635
YT2005-1-Ap1 Kurihara, Onomichi 2005.03.05 Ono 386,249 299,551 1,025,703
YT2005-1-Ap2 Kurihara, Onomichi 2005.03.05 Ono 1,145,627  882,220 4,580,390
YT2005-1-Ap4 Kurihara, Onomichi 2005.03.05 Ono 813,412 615,202 3,756,417
KKE2019-5d Kawajiri, Kure 2019.03.16 Kre 184,484 138,460 936,406
KKE2019-6d Kawajiri, Kure 2019.03.16 Kre 369,578 278,630 2,136,055
KKE2019-8d Kawajiri, Kure 2019.03.16 Kre 417,047 313,603 2,463,980
KKE2019-11d Kawajiri, Kure 2019.03.16 Kre 344,682 259,770 1,988,195
FACT110 Mukaishima 1 2012.03.19 Muk 443,391 330,374 2,213,708
FACT111 Mukaishima 1 2012.03.19 Muk 530,764 392,925 2,691,564
YT2004-Ap1 Mukaishima 3 2004.01.28 Muk 802,243 617,739 2,983,375
YT2004-Ap17 Mukaishima 3 2004.01.29 Muk 925,945 720,928 4,019,596
YT2004-Ap18 Mukaishima 3 2004.01.29 Muk 648,414 491,681 3,214,390
FACT24 Innnoshima 1 2009.08.25 Inn 601,395 447,827 3,297,068
FACT157 Innnoshima 1 2013.03.30 Inn 682,230 512,792 3,581,029
FACT158 Innnoshima 2 2013.03.30 Inn 444,213 329,269 2,423,674
YT2004-Ap2 Innnoshima 3 2004.01.28 Inn 590,038 448,767 3,062,029
YT2004-Ap9 Innnoshima 4 2004.01.28 Inn 340,931 259,071 1,751,508
FACT159 Ikuchijima 1 2013.04.23 Iku 337,184 253,724 1,838,443
FACT164 Ikuchijima 2 2013.04.30 Iku 365,148 273,741 2,018,363
FACT165 Ikuchijima 2 2013.04.30 Iku 296,847 222,520 1,689,762
FACT173 Ikuchijima 3 2013.05.07 Iku 407,486 308,867 2,325,840
FACT174 Ikuchijima 3 2013.05.07 Iku 890,895 680,129 3,855,503
FACT188 Ohmishima 1 2014.03.28 Ohm 609,670 459,241 3,148,761
FACT190 Ohmishima 2 2014.03.28 Ohm 542,077 406,988 3,022,620
FACT192 Ohmishima 3 2014.03.28 Ohm 428,164 320,154 2,521,039
FACT194 Ohmishima 3 2014.03.28 Ohm 347,202 260,088 2,111,406
YT2005-Ap43 Ohmishima 5 2005.12.16 Ohm 519,501 394,926 2,938,063
FACT203 Hakatajima 1 2014.04.19 Hak 431,393 321,996 2,471,386
FACT210 Hakatajima 3 2014.04.26 Hak 234,729 175,184 1,361,140
FACT215 Hakatajima 4 2014.05.01 Hak 362,459 273,737 2,207,141
FACT216 Hakatajima 4 2014.05.01 Hak 479,212 361,246 2,603,294
FACT217 Hakatajima 4 2014.05.01 Hak 540,473 409,670 3,039,106
FACT218 Ohshima 1 2014.05.17 Ohs 478,380 358,778 2,645,564
FACT228 Ohshima 1 2014.05.17 Ohs 351,081 262,959 2,070,297
FACT230 Ohshima 2 2014.05.17 Ohs 907,618 702,505 4,182,623
FACT231 Ohshima 2 2014.05.17 Ohs 343,885 258,180 2,060,732
YT2004-Ap65 Ohshima 3 2004.01.31 Ohs 824,801 624,690 3,319,858
YT2006-Ap12 Ohsakikamijima 1 2006.12.21 Osk 809,828 613,162 3,881,513
YT2006-Apo13 Ohsakikamijima 1 2006.12.21 Osk 638,800 493,364 3,340,137
YT2006-Apo14 Ohsakikamijima 1 2006.12.21 Osk 513,099 391,261 2,772,793
YT2006-Ap15 Ohsakikamijima 2 2006.12.21 Osk 624,672 482,994 3,389,840
YT2006-Apo16 Ohsakikamijima 2 2006.12.21 Osk 703,884 544,903 3,536,874
FACT296 Ohsakishimojima 1 2015.05.16 Oss 674,877 501,386 3,412,139
FACT298 Ohsakishimojima 1 2015.05.16 Oss 869,970 669,627 4,298,248
FACT299 Ohsakishimojima 1 2015.05.16 Oss 1,057,143 813,733 4,723,477
FACT337 Ohsakishimojima 2 2015.05.30 Oss 375,107 282,977 2,012,430
FACT338 Ohsakishimojima 2 2015.05.30 Oss 1,141,604 875,120 4,768,518
FACT301 Kamikamagarijima 1 2015.05.16 Kk 487,512 368,339 2,829,217
FACT304 Kamikamagarijima 1 2015.05.16 Kk 349,187 261,167 2,047,916
FACT347 Kamikamagarijima 2 2015.05.30 Kk 1,582,305 1,197,292 5,774,382
FACT348 Kamikamagarijima 2 2015.05.30 Kk 528,843 398,074 3,028,705
YT2006-Apo51 Kamikamagarijima 3 2006.12.23 Kk 850,356 654,643 3,181,260
FACT309 Shimokamagarijima 1 2015.05.16 Sk 562,118 424,020 3,035,563
FACT310 Shimokamagarijima 1 2015.05.16 Sk 652,773 498,554 3,406,747
FACT352 Shimokamagarijima 2 2015.05.30 Sk 528,294 398,328 3,002,296
FACT353 Shimokamagarijima 2 2015.05.30 Sk 630,449 475,138 3,241,963
YT2006-Ap91 Shimokamagarijima 3 2006.12.24 Sk 819,549 628,697 3,279,102
KKE2019-2d Kurahashijima 1 2019.03.16 Kra 412,653 308,736 2,401,222
KKE2019-15d Kurahashijima 1 2019.06.01 Kra 241,634 182,177 1,443,335
KKE2019-16d Kurahashijima 1 2019.06.01 Kra 272,576 205,352 1,588,854
KKE2019-17d Kurahashijima 1 2019.06.01 Kra 297,317 223,525 1,803,011
KKE2019-1d Etajima 1 2019.03.16 Eta 480,989 359,975 2,815,332
KKE2019-25d Etajima 1 2019.06.01 Eta 231,987 173,884 1,349,540
KKE2019-20d Etajima 2 2019.06.01 Eta 277,509 205,728 1,658,799
KKE2019-21d Etajima 2 2019.06.01 Eta 340,125 252,617 2,065,899
FACT265 Tamagawa, Imabari 2014.10.08 Ima 277,880 211,743 1,326,597
FACT266 Tamagawa, Imabari 2015.02.27 Ima 290,853 216,641 2,278,718
FACT268 Tamagawa, Imabari 2015.02.27 Ima 452,811 342,996 2,334,059
FACT269 Tamagawa, Imabari 2015.02.27 Ima 564,866 425,470 2,997,828
FACT270 Tamagawa, Imabari 2015.02.27 Ima 287,971 213,685 1,489,619
FACT271 Tamagawa, Imabari 2015.02.27 Ima 369,675 275,842 2,186,221
FACT273 Tamagawa, Imabari 2015.02.27 Ima 524,129 392,358 2,900,232
FACT276 Tamagawa, Imabari 2015.02.27 Ima 367,933 276,014 2,059,745
FACT284 Tamagawa, Imabari 2015.02.27 Ima 757,705 570,727 3,777,165
HS53 Saga, Kurose, Kochi 1984.11.12 Koc 288,082 215,310 1,512,866
HS310 Mt. Tsurugi, Tokushima unknown Tsu 545,818 409,244 2,996,747
HS2222 Mt. Tsurugi, Tokushima unknown Tsu 468,929 348,670 2,616,918
HS2223 Mt. Tsurugi, Tokushima unknown Tsu 938,752 700,751 4,372,891
HS2797 Mt. Tsurugi, Tokushima unknown Tsu 809,282 609,439 3,825,308
HS2798 Mt. Tsurugi, Tokushima unknown Tsu 430,746 323,737 2,447,166
  1. aThe locality codes are consistent with those in Fig. 1
  2. bTotal reads obtained from NGS
  3. cFiltered reads with more than Q30 quality and with length more than100 bp
  4. dSamples newly obtained in this study
  5. eSequences examined in STACKS for each sample (base pair)