Table 5 Full-length X. tropicalis XKol sequences
Subfamily | CDS | CDS locus | Full-length Xkol sequence | Length | TIR left | TIR right | TSD left | TSD right |
|---|---|---|---|---|---|---|---|---|
A1 | Tr21 | Chr04:107657217..107659511(+) | Chr04:107650836..107663091(+) | 12,216 | AGCGATTCTGACATGG | AGTGATACTGACAGTA | TTAA | TTAA |
A1 | Tr22 | Chr01:168455606..168457900(−) | Chr01:168451382..168460584(−) | 9163 | AGCGATTCTGACATGG | AGTGATACTGACAGTA | TTAA | TTAA |
A1 | Tr23 | Chr03:106168762..106171056(−) | Chr03:106165634..106173458(−) | 7785 | AGCGATTCTGACATGG | AGTGATACTGACAGTA | TTAA | TTAA |
A2 | Tr8 | Chr08:54548260..54550611(+) | Chr08:54546557..54553359(+) | 6763 | AGGAGAAGGAAAGGCT | AGGAAATGGCAAGCCA | TTAA | TTAA |
A2 | Tr11 | scaffold_609:18293..20635(−) | scaffold_609..15284:22344(−) | 7021 | AGGAGAAGGAAAGGCT | AGGAAATGGCAAGCCA | TTAA | ATAA |
A3 | Tr14 | scaffold_51:231432..233759(−) | scaffold_51..227047:240993(−) | 13,907 | AGGACATGTCAACCCC | AGGACGTGTCAACCCT | TTAA | TTAA |
A3 | Tr15 | Chr01:83498100..83500424(+) | Chr01:83495893..83504753(+) | 8821 | AGGACATGTCAACCCC | AGGACGTGTCAACCAT | TTAA | TTAA |
A4 | Tr25 | Chr01:107512548..107514821(+) | Chr01:107510216..107521330(+) | 11,075 | AGGACAAGGAAAGCTT | AGGAAAATGAAAGTCA | TTAA | TTAA |
A5 | Tr2 | Chr02:100830975..100833458(+) | Chr02:100828018..100838339(+) | 10,282 | AGGGGAACTATCATGA | AGGGGATCTATCATGA | TTAA | TTAA |
A6 | Tr9 | Chr02:55486066..55488417(+) | Chr02:55483392..55492644(+) | 9213 | AGAGCAAGTAAAGTCG | AGAGCAAGGCAAGCTT | TTAA | TTAA |